Jiangsu Hanbon Science&Technology Co., Ltd.
Jiangsu Hanbon Science&Technology Co., Ltd.

Oligonucleotide Purification Techniques Explained

In the realm of **biopharmaceutical manufacturing**, **oligonucleotide purification** is a critical step that ensures the viability and effectiveness of therapeutic products. Oligonucleotides, the short strands of nucleic acids, are used in various applications including diagnostics, gene editing, and targeted therapies. Purifying these sequences accurately determines their success in downstream applications. This article explores the different techniques employed in the **oligonucleotide manufacturing process**, comparing methodologies and discussing scalability and storage considerations. Whether you're engaged in **large scale oligonucleotide synthesis** or exploring custom oligonucleotide synthesis, understanding purification techniques is key to achieving high-quality outcomes.

HPLC vs PAGE Methods

High-performance liquid chromatography (**HPLC**) and polyacrylamide gel electrophoresis (**PAGE**) are two predominant methods used in **oligonucleotide purification**.

MethodAdvantagesDisadvantages
HPLCHigh precision, reproducibility, scalableHigh cost, requires complex **chromatography systems**
PAGESimple, cost-effective for small scalesLimited scalability, lower precision


Desalting and Buffer Exchange

Post-synthesis, oligonucleotides often require desalting or buffer exchanges, crucial processes to remove impurities that can interfere with subsequent applications. Traditionally, desalting is performed using size exclusion chromatography (**size exclusion column**) which provides rapid and efficient purification. This method helps mitigate risks that can arise in **downstream bioprocessing** due to salt accumulation.

Buffer exchange is similarly critical for ensuring oligonucleotides are in the correct medium for further usage, often performed using **tangential flow filtration systems**. These systems ensure the oligonucleotides are at the right pH levels and free from solvents that may affect their functional performance in **protein a antibody purification** or other biochemical assays.

Purity Analysis Methods

Ensuring the purity of oligonucleotides is paramount, especially when dealing with therapeutic products. The most reliable methods include **supercritical chromatography** and **sfc chromatography**, which offer high resolution and sensitivity. Additionally, **chiral column chromatography** is crucial for separating isomers in custom applications, while **simulated moving bed chromatography** and **downstream purification** address the need for continuous processing in large-scale operations.

MethodPurity LevelSuitability
Supercritical ChromatographyHighComplex mixtures
SFC ChromatographyMediumChiral separations
Simulated Moving Bed ChromatographyMediumContinuous production

These methods cater to different needs in purification and allow manufacturers to ensure the consistency and quality of their oligonucleotide products as required by rigorous standards in **chiral column chromatography**.

Scalability Considerations

As demands for therapeutic oligonucleotides grow, scalability becomes a principal concern in **oligonucleotide manufacturing process**. While some methods offer high precision and purity, they must also cater to increasing volume demands. Systems such as tangential flow filtration (**TFF systems**) and chromatographic skids provide scalable solutions that integrate seamlessly into existing manufacturing workflows.

**Tangential flow filtration system** technology has risen as a credible option, given its ease of integration and ability to manage large biomolecule batches without compromising quality. Furthermore, **downstream purification process** innovations make it possible to expand production capacities without escalating costs excessively.

Post-Purification Storage

A crucial factor in maintaining **oligonucleotide synthesis machine** efficiency is appropriate post-purification storage. Ensuring that oligonucleotides retain their structural integrity over time requires specific conditions, such as controlled temperature and humidity.

Depending on the application, storing oligonucleotides might utilize refrigeration or specific buffers that preserve their stability and prevent degradation. This is particularly pressing in custom applications where synthesized oligos play key roles, like those crafted using **oligo synthesizers** for precision medicine.

Effective storage solutions devised for **prep hplc** and **moving bed chromatography** ensure the long-term viability and utility of oligonucleotides, catering to the evolving needs of **biopharmaceutical manufacturing**.

Conclusion

The **chromatography machine** plays a pivotal role in **oligonucleotide purification**, influencing the quality and efficiency of the **oligonucleotide manufacturing process**. By comparing **HPLC** and **PAGE** methods, understanding critical steps like desalting and buffer exchange, and considering scalability and storage, professionals can enhance their approaches to **protein a antibody purification** and allied operations. Whether through advanced systems or traditional techniques, achieving high purity levels ensures the effectiveness of therapeutic oligonucleotides and supports their critical applications in medicine and diagnostics. Embracing continuous innovation increases efficacy while accommodating the growing demands in custom oligonucleotide synthesis and downstream applications.

References:

Supercritical Chromatography - NCBI

HPLC Uses - ScienceDirect

PAGE Methodology - NCBI

Desalting Techniques - NCBI

Scalability in Bioprocessing - NCBI

Oligonucleotide Storage - ResearchGate